Index

_

__getitem__() (slim4.slim.DataOutput method) __init__() (slim4.particles.PolygonMeshIntersection method) (slim4.particles2d.Particle2dRT method) (slim4.particles2d.ParticleArrays2d method) (slim4.particles2d.Plastic method) (slim4.particles2d.ResidenceTimeArray method) (slim4.particles2d.Sediments2d method) (slim4.particles2d.Tracker2d method) (slim4.particles3d.ConnectivityArray method) (slim4.particles3d.Particle3dCorals method) (slim4.particles3d.Particle3dSeagrass method) (slim4.particles3d.Particle3dSediments method) (slim4.particles3d.ParticleArrays3d method) (slim4.particles3d.SeagrassFateArray method) (slim4.particles3d.SedimentsMixtureQuasi3d method) (slim4.particles3d.SedimentsQuasi3d method) (slim4.particles3d.Tracker3d method) (slim4.post.Rasterizer method) (slim4.post.Swan method) (slim4.pre.Struct method) (slim4.pre3d.VMapExponential method) (slim4.pre3d.VMapHybrid method) (slim4.pre3d.VMapProportional method) (slim4.pre3d.VMapSiddornFurner method) (slim4.pre3d.VMapSongHaidvogel method) (slim4.pre3d.VMapZ method) (slim4.slim.DataFile method) (slim4.slim.DataFileWriter method) (slim4.slim.DataOutput method) (slim4.slim.DataStatic method) (slim4.slim.DataWrap method) (slim4.slim.LBVH method) (slim4.slim.LinearSolver method) (slim4.slim.LinearSolverPETSc method) (slim4.slim.ReactionDemo method) (slim4.slim.ReactionExponentialDecay method) (slim4.slim.ReactionNPZD method) (slim4.slim2d.Mesh method) (slim4.slim2d.ShallowWater method) (slim4.slim2d.Tracer method) (slim4.slim3d.DataExtractLayer method) (slim4.slim3d.DataExtrude method) (slim4.slim3d.DataHMultiply method) (slim4.slim3d.DataLinear method) (slim4.slim3d.DataVSum method) (slim4.slim3d.Mesh method) (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method) (slim4.slim3d.ReactionExponentialDecay3d method) (slim4.slim3d.ReactionLatentFlux method) (slim4.slim3d.ReactionLinearDecay method) (slim4.slim3d.ReactionLWHC method) (slim4.slim3d.ReactionNPZD3d method) (slim4.slim3d.ReactionPenSource method) (slim4.slim3d.ReactionSurfaceProd method) (slim4.slim3d.ReactionTemperatureCorrection method) (slim4.slim3d.Tracer method) (slim4.slim3d.Turbulence method) (slim4.slim3d.UV method)

A

Abin (class in slim4.slim) abin2nc() (in module slim4.netcdf_to_abin) abin_shrink() (in module slim4.tools) add() (slim4.rbf.RbfInfo method) add_dissipation() (slim4.slim2d.ShallowWater method) add_output_variable() (slim4.swan.Swan method) add_particles() (slim4.particles2d.Particle2dRT method) (slim4.particles2d.ParticleArrays2d method) (slim4.particles2d.Plastic method) (slim4.particles2d.Sediments2d method) (slim4.particles2d.Tracker2d method) (slim4.particles3d.Particle3dCorals method) (slim4.particles3d.Particle3dSeagrass method) (slim4.particles3d.Particle3dSediments method) (slim4.particles3d.ParticleArrays3d method) (slim4.particles3d.SedimentsMixtureQuasi3d method) (slim4.particles3d.SedimentsQuasi3d method) (slim4.particles3d.Tracker3d method) add_reaction() (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method)

add_tracer() (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method) add_turbulence() (slim4.slim3d.Problem method) agrow (slim4.swan.SwanOptions attribute) allgatherv_scalar() (slim4.slim.MPI method) allreduce_dev() (in module slim4.slim) Ameta (class in slim4.slim) append() (slim4.slim.DataFileWriter method) append_to_xdmf() (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.ParticleArrays3d method) (slim4.slim2d.Mesh method) (slim4.slim3d.Mesh method) apply_rbf_weights() (in module slim4.rbf) approx_amplitude_at_points() (slim4.tpxo.TPXO method) astrol() (in module slim4.tpxo) astronomical_argument_and_nodal_correction() (in module slim4.tpxo) at_grid_points() (slim4.tpxo.TPXO method) at_grid_points_old() (slim4.tpxo.TPXO method) at_points() (slim4.tpxo.TPXO method) at_points_precomputed() (slim4.tpxo.TPXO method)

B

barrier() (slim4.slim.MPI method) BOTTOM (slim4.interpolator.Zlevel attribute) boundary_elements_by_tag() (slim4.slim.Mesh method) boundary_id() (slim4.slim2d.Mesh method) boundary_nodes() (slim4.slim2d.Mesh method) (slim4.slim3d.Mesh method)

boundary_nodes_dg() (slim4.slim2d.Mesh method) boundary_nodes_global() (in module slim4.tools) boundary_parameters (slim4.swan.Swan attribute) breaking_alpha (slim4.swan.SwanOptions attribute) breaking_gamma (slim4.swan.SwanOptions attribute) buffer (slim4.tpxo.GridTPXO attribute) build_node_map() (in module slim4.swan)

C

cds1 (slim4.swan.SwanOptions attribute) cds2 (slim4.swan.SwanOptions attribute) check_consistency_idx() (slim4.slim2d.Mesh method) check_consistency_scalar() (slim4.slim2d.Mesh method) check_consistency_z() (slim4.slim3d.Mesh method) clip_inclusive() (in module slim4.pre) clip_velocity() (slim4.slim3d.UV method) close() (slim4.slim.DataFileWriter method) cols (slim4.rbf.Csr attribute) comm_info (slim4.swan.Swan attribute) compute_2d_contribution() (slim4.slim3d.UV method) compute_amp_pha() (slim4.tpxo.TPXO method) compute_cfl() (slim4.slim2d.ShallowWater method) (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method) compute_csr() (slim4.rbf.RbfInterpolator2D method) compute_csr_cg() (slim4.tpxo.GridTPXO method) compute_csr_cg_2d() (slim4.pre.Struct method) compute_csr_cg_3d() (slim4.pre.Struct method) compute_curl() (in module slim4.slim2d) compute_grad() (in module slim4.slim2d) compute_huv() (slim4.slim3d.UV method) compute_rbf_weights() (in module slim4.rbf) compute_rbf_weights_radius() (in module slim4.rbf) compute_rpe() (in module slim4.post) ConnectivityArray (class in slim4.particles3d)

convert_and_fix_missing() (in module slim4.netcdf_to_abin) convert_time() (in module slim4.netcdf_to_abin) convert_type() (in module slim4.netcdf_to_abin) count (slim4.rbf.RbfInfo attribute) crank_nicolson() (slim4.slim3d.TemporalIterator static method) create_constant() (slim4.slim.DataStatic static method) create_coordinate_vector() (slim4.slim3d.Mesh method) create_empty() (slim4.slim.IdxArrayDevice static method) (slim4.slim.ScalarArrayDevice static method) (slim4.slim.ScalarArrayDeviceMPI static method) create_exponential_deep() (slim4.pre3d.VMapHybrid static method) create_from_host() (slim4.slim.IdxArrayDevice static method) (slim4.slim.ScalarArrayDevice static method) (slim4.slim.ScalarArrayDeviceMPI static method) create_from_vmap() (slim4.pre3d.VMapZ static method) create_xdmf() (slim4.particles2d.ParticleArrays2d static method) (slim4.particles3d.ParticleArrays3d static method) (slim4.slim2d.Mesh method) (slim4.slim3d.Mesh method) create_zeros() (slim4.slim.IdxArrayDevice static method) (slim4.slim.ScalarArrayDevice static method) (slim4.slim.ScalarArrayDeviceMPI static method) Csr (class in slim4.pre) (class in slim4.rbf) (class in slim4.slim) csr (slim4.rbf.RbfInterpolator2D attribute) csr_start (slim4.rbf.Csr attribute)

D

dabs (slim4.swan.SwanOptions attribute) Data (class in slim4.slim) DataExtractLayer (class in slim4.slim3d) DataExtrude (class in slim4.slim3d) DataFile (class in slim4.slim) DataFileWriter (class in slim4.slim) DataHMultiply (class in slim4.slim3d) DataLinear (class in slim4.slim3d) DataOutput (class in slim4.slim) DataStatic (class in slim4.slim) DataType (class in slim4.slim) DataVSum (class in slim4.slim3d) DataWrap (class in slim4.slim) decompose() (slim4.particles3d.Particle3dSeagrass method)

delta (slim4.swan.SwanOptions attribute) deltspc (slim4.swan.SpectraAtPoints attribute) depth() (slim4.pre.Struct method) dhms() (in module slim4.tools) diffraction (slim4.swan.SwanOptions attribute) dirk() (slim4.slim3d.TemporalIterator static method) dirk_butcher() (slim4.slim3d.TemporalIterator static method) DissipationFormula (class in slim4.slim2d) DissipationType (class in slim4.slim2d) do_export() (slim4.slim3d.Problem method) drel (slim4.swan.SwanOptions attribute) DType (class in slim4.slim) duplicate() (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method)

E

empty_rbf_info() (in module slim4.rbf) enable_wetting_drying() (slim4.slim2d.ShallowWater method) Endianness (class in slim4.slim) Equation (class in slim4.slim) eta_dg() (slim4.interpolator.TimeSeries3D method) eval() (slim4.swan.SwanBoundaryData method) eval_at_points() (slim4.pre.Struct method) eval_data() (slim4.particles3d.ParticleArrays3d method) eval_data2d() (slim4.particles2d.ParticleArrays2d method)

eval_data_gpu() (slim4.particles3d.ParticleArrays3d method) eval_mesh() (slim4.slim.Data method) eval_mesh_gpu() (slim4.slim.Data method) evaluate_parameters() (slim4.swan.Swan method) export() (slim4.swan.Swan method) export_mean_transport() (slim4.slim3d.Problem method) export_spectra_at_points() (slim4.swan.Swan method) exscan_sum_idx() (slim4.slim.MPI method) extract_variables_from_xdmf() (in module slim4.interpolator) extrude() (in module slim4.pre3d)

F

fid (slim4.swan.Swan attribute) fill() (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method) fill_mask() (in module slim4.slim) fill_mask_2d() (in module slim4.pre) fill_mask_3d() (in module slim4.pre) fill_mask_nd() (in module slim4.slim) fill_vector() (slim4.slim.Equation method) find_band_tri() (in module slim4.tools) find_nearest_points() (slim4.slim.LBVH method) find_points() (slim4.slim.LBVH method) (slim4.slim2d.Mesh method) (slim4.slim3d.Mesh method)

find_points_vert() (slim4.interpolator.TimeSeries3D method) find_points_z() (slim4.slim3d.Mesh method) find_transect_extremities() (in module slim4.interpolator) flow (slim4.swan.SwanOptions attribute) fname (slim4.swan.SpectraAtPoints attribute) format_time() (in module slim4.tools) friction (slim4.swan.SwanOptions attribute) friction_coeff (slim4.swan.SwanOptions attribute) friction_method (slim4.swan.SwanOptions attribute) from_files() (slim4.pre.Struct static method) from_output() (slim4.slim3d.Mesh static method)

G

gather_dg_to_cg() (slim4.slim2d.Mesh method) (slim4.slim3d.Mesh method) gather_dg_to_cg_idx() (slim4.slim2d.Mesh method) GatherOp (class in slim4.slim2d) gen3 (slim4.swan.SwanOptions attribute) gen_loops() (in module slim4.swan) geodesic_distance() (in module slim4.slim) get() (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method) get_2d_variables() (slim4.slim3d.UV method) get_attr() (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.ParticleArrays3d method) get_attribute_names() (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.ParticleArrays3d method) get_block() (slim4.rbf.RbfInterpolator2D method) get_bndtype() (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.ParticleArrays3d method) get_boundary_name() (slim4.slim2d.Mesh method) get_boundary_segments() (in module slim4.post) get_compile_params() (in module slim4.slim) get_concentration() (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.ParticleArrays3d method) get_concentration_3D() (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.SedimentsMixtureQuasi3d method) (slim4.particles3d.SedimentsQuasi3d method) get_current_mass() (in module slim4.tools) get_current_mass_2d() (in module slim4.tools) get_data() (slim4.pre.Struct method) (slim4.rbf.RbfInterpolator2D method) get_default() (slim4.slim.MPI static method) get_default_wave_speed() (slim4.slim3d.UV method) get_deletion_time() (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.ParticleArrays3d method) get_density() (slim4.particles.PolygonMeshIntersection method) get_edges() (in module slim4.tools) get_entries() (slim4.particles2d.ResidenceTimeArray method) (slim4.particles3d.ConnectivityArray method) (slim4.particles3d.SeagrassFateArray method)

get_eta() (slim4.tpxo.GridTPXO method) get_flux() (in module slim4.tools) get_gpu_tmpvars() (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method) get_horizontal_transect() (slim4.interpolator.TimeSeries3D method) get_interpolation_weights() (in module slim4.tools) (slim4.tpxo.TPXO method) get_interpolation_weights_on_grid() (in module slim4.tools) get_layer() (slim4.particles3d.ParticleArrays3d method) get_lonlat_grid() (slim4.pre.Struct method) get_name_map() (in module slim4.netcdf_to_abin) get_position() (slim4.particles.ParticleArrays method) (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.ParticleArrays3d method) get_settlement_concentration() (slim4.particles3d.SedimentsMixtureQuasi3d method) get_settlement_concentrations() (slim4.particles3d.SedimentsQuasi3d method) get_space_time_average() (slim4.pre.Struct method) get_standard_equiv() (in module slim4.netcdf_to_abin) get_standard_variable_name() (in module slim4.netcdf_to_abin) get_stratification() (slim4.interpolator.TimeSeries3D method) get_stratification_on_route() (slim4.interpolator.TimeSeries3D method) get_sub() (slim4.slim.ScalarArrayDeviceMPI method) get_sub_view() (slim4.slim.ScalarArrayDeviceMPI method) get_suspension_concentrations() (slim4.particles3d.SedimentsMixtureQuasi3d method) (slim4.particles3d.SedimentsQuasi3d method) get_time() (slim4.pre.Struct method) get_tracer_variables() (slim4.slim3d.UV method) get_triangle() (slim4.particles.ParticleArrays method) (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.ParticleArrays3d method) get_uv() (slim4.tpxo.GridTPXO method) get_variable() (slim4.pre.Struct method) get_vertical_transect() (slim4.interpolator.TimeSeries3D method) GridTPXO (class in slim4.tpxo)

H

has_closed_tags (slim4.swan.Swan attribute) has_nan() (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method)

has_wind (slim4.swan.Swan attribute) HorizontalDiffusionOrientation (class in slim4.slim3d) HorizontalDiffusivityFormula (class in slim4.slim2d) HorizontalViscosityFormula (class in slim4.slim3d)

I

IdxArrayDevice (class in slim4.slim) implicit_iter() (slim4.slim.Equation method) index (slim4.rbf.Csr attribute) input_data (slim4.swan.Swan attribute) integral() (in module slim4.tools) integral_product() (in module slim4.tools) integrate() (slim4.slim3d.Mesh method) integrate_vertical() (slim4.slim3d.Mesh method) interp_info (slim4.rbf.RbfInterpolator2D attribute) interpolate() (slim4.interpolator.TimeSeries2D method) (slim4.interpolator.TimeSeries3D method) (slim4.post.Rasterizer method) (slim4.slim3d.Mesh method) interpolate_on_route() (slim4.interpolator.TimeSeries3D method) interpolate_tif() (in module slim4.tools) interpolation_weights_second_dimension_structured_grid() (in module slim4.slim) inv_mass_mult() (slim4.slim.Equation method) (slim4.slim3d.Mesh method) is_stationary() (slim4.swan.NonStationarySwan method) (slim4.swan.StationarySwan method) (slim4.swan.Swan method)

isoformat() (in module slim4.swan) iterate() (in module slim4.slim3d) (slim4.slim3d.TemporalIterator method) iterate_crank_nicolson() (in module slim4.slim) iterate_dirk2() (in module slim4.slim) iterate_dirk3() (in module slim4.slim) iterate_dirk_butcher() (in module slim4.slim) iterate_expl() (in module slim4.slim3d) iterate_expl_rk1() (in module slim4.slim3d) iterate_impl() (in module slim4.slim3d) iterate_impl_rk1() (in module slim4.slim3d) iterate_implicit_euler() (in module slim4.slim) iterate_low_storage_runge_kutta() (in module slim4.slim) iterate_low_storage_runge_kutta_array() (in module slim4.slim) iterate_midpoint() (in module slim4.slim) (in module slim4.slim3d) iterate_offline() (in module slim4.slim3d) iterate_runge_kutta() (in module slim4.slim) iterate_runge_kutta_butcher() (in module slim4.slim)

L

lat() (slim4.pre.Struct method) LBVH (class in slim4.slim) LimiterType (class in slim4.slim) LinearSolver (class in slim4.slim) LinearSolverPETSc (class in slim4.slim)

load() (slim4.slim3d.Mesh static method) (slim4.slim3d.Problem method) load_variable() (slim4.interpolator.TimeSeries2D method) (slim4.interpolator.TimeSeries3D method) log() (in module slim4.tools) lon() (slim4.pre.Struct method)

M

mass_mult() (slim4.slim.Equation method) (slim4.slim3d.Mesh method) max_idx() (slim4.slim.MPI method) max_scalar() (slim4.slim.MPI method) mdc (slim4.swan.SwanOptions attribute) memset() (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method) merge_structs() (slim4.pre.Struct static method) Mesh (class in slim4.slim) (class in slim4.slim2d) (class in slim4.slim3d) metaread() (in module slim4.abin) metawrite() (in module slim4.abin) midpoint() (slim4.slim3d.TemporalIterator static method) min_idx() (slim4.slim.MPI method) min_scalar() (slim4.slim.MPI method) mkpath() (in module slim4.slim) module slim4.abin slim4.interpolator slim4.netcdf_to_abin slim4.particles slim4.particles2d slim4.particles3d slim4.post slim4.pre slim4.pre3d slim4.rbf slim4.slim slim4.slim2d slim4.slim3d slim4.swan slim4.tools slim4.tpxo

move() (slim4.particles2d.Particle2dRT method) (slim4.particles2d.Plastic method) (slim4.particles2d.Sediments2d method) (slim4.particles2d.Tracker2d method) (slim4.particles3d.Particle3dCorals method) (slim4.particles3d.Particle3dSeagrass method) (slim4.particles3d.Particle3dSediments method) (slim4.particles3d.SedimentsMixtureQuasi3d method) (slim4.particles3d.SedimentsQuasi3d method) (slim4.particles3d.Tracker3d method) MPI (class in slim4.slim) MpiReduceOp (class in slim4.slim) msc (slim4.swan.SwanOptions attribute) mxitst (slim4.swan.SwanOptions attribute) myinterp1d() (in module slim4.interpolator)

N

n_neighbour_partitions() (slim4.post.Swan method) nc2abin() (in module slim4.netcdf_to_abin) nc_to_abin() (in module slim4.netcdf_to_abin) ncp2c() (in module slim4.tools) neighbour_partition() (slim4.post.Swan method) neighbour_partition_cg_extent() (slim4.slim2d.Mesh method) new_linear_system() (slim4.slim2d.ShallowWater method) (slim4.slim2d.Tracer method) (slim4.slim3d.Problem method)

new_mesh_3d() (slim4.slim3d.Mesh method) new_vector() (slim4.slim.Equation method) (slim4.slim3d.Tracer method) (slim4.slim3d.Turbulence method) (slim4.slim3d.UV method) NonStationarySwan (class in slim4.swan) np2c() (in module slim4.tools) npnts (slim4.swan.SwanOptions attribute)

O

OfflineProblem (class in slim4.slim3d) open_node_tags (slim4.swan.Swan attribute) openappend() (in module slim4.abin) openmod() (in module slim4.abin) openread() (in module slim4.abin) openread_double() (slim4.slim.Abin static method)

openread_float() (slim4.slim.Abin static method) openread_idx() (slim4.slim.Abin static method) openread_scalar() (slim4.slim.Abin static method) openwrite() (in module slim4.abin) options (slim4.swan.Swan attribute) output_variables (slim4.swan.Swan attribute) OutputPrecision (class in slim4.slim)

P

parse_projection() (in module slim4.tools) parse_time() (in module slim4.tools) Particle2dRT (class in slim4.particles2d) Particle3dCorals (class in slim4.particles3d) Particle3dSeagrass (class in slim4.particles3d) Particle3dSediments (class in slim4.particles3d) particle_density() (slim4.post.Rasterizer method) ParticleArrays (class in slim4.particles) ParticleArrays2d (class in slim4.particles2d) ParticleArrays3d (class in slim4.particles3d) ParticleBoundaryType (class in slim4.particles) particles_in_polygons() (slim4.particles.PolygonMeshIntersection method) partition_mesh() (in module slim4.slim2d) (in module slim4.slim3d) partition_output() (slim4.slim3d.Mesh static method)

peak_parameters (slim4.swan.Swan attribute) pfrom (slim4.rbf.RbfInfo attribute) Plastic (class in slim4.particles2d) PolygonMeshIntersection (class in slim4.particles) powk (slim4.swan.SwanOptions attribute) powst (slim4.swan.SwanOptions attribute) prepro_discharge() (in module slim4.tools) prepro_discharge3d() (in module slim4.tools) PreproReaderFunction1d (class in slim4.tools) PreproReaderTimeseries1d (class in slim4.tools) print_pos() (slim4.particles.PolygonMeshIntersection method) Problem (class in slim4.slim3d) proj_transform() (in module slim4.slim) project_l2() (in module slim4.slim3d) project_l2_points() (in module slim4.slim3d) pto (slim4.rbf.RbfInfo attribute)

Q

quantile_scalar() (slim4.slim.MPI method)

R

RasterInterpType (class in slim4.post) Rasterizer (class in slim4.post) RbfInfo (class in slim4.rbf) RbfInterpolator2D (class in slim4.rbf) react() (slim4.slim.Reaction method) Reaction (class in slim4.slim) ReactionDemo (class in slim4.slim) ReactionExponentialDecay (class in slim4.slim) ReactionExponentialDecay3d (class in slim4.slim3d) ReactionLatentFlux (class in slim4.slim3d) ReactionLinearDecay (class in slim4.slim3d) ReactionLWHC (class in slim4.slim3d) ReactionNPZD (class in slim4.slim) ReactionNPZD3d (class in slim4.slim3d) ReactionPenSource (class in slim4.slim3d) ReactionSurfaceProd (class in slim4.slim3d) ReactionTemperatureCorrection (class in slim4.slim3d) read_polygons_shp() (in module slim4.tools) reinterp_at_finest_grid() (slim4.pre.Struct static method) remove_all() (slim4.particles2d.ParticleArrays2d method)

remove_inactive() (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.ParticleArrays3d method) render() (slim4.post.Rasterizer method) RenderType (class in slim4.post) reorder() (in module slim4.swan) (slim4.rbf.RbfInfo method) repeat2d3d() (slim4.slim3d.Mesh method) ResidenceTimeArray (class in slim4.particles2d) resize() (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method) resize_no_copy() (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method) resuspend_sediments() (slim4.particles2d.Sediments2d method) (slim4.particles3d.SedimentsMixtureQuasi3d method) (slim4.particles3d.SedimentsQuasi3d method) rk() (slim4.slim3d.TemporalIterator static method) rk_butcher() (slim4.slim3d.TemporalIterator static method) rkls() (slim4.slim3d.TemporalIterator static method) rkls_iter() (slim4.slim.Equation method) rotate() (slim4.tools.VectorRotation method)

S

save() (slim4.slim3d.Problem method) save_mesh() (slim4.slim3d.Mesh method) ScalarArrayDevice (class in slim4.slim) ScalarArrayDeviceMPI (class in slim4.slim) scatter() (slim4.post.Swan method) scatter_array() (slim4.slim2d.Mesh method) (slim4.slim3d.Mesh method) scatter_cg_idx() (slim4.slim2d.Mesh method) scatter_cg_scalar() (slim4.slim2d.Mesh method) scatter_cg_to_dg() (slim4.slim3d.Mesh method) SeagrassFateArray (class in slim4.particles3d) Sediments2d (class in slim4.particles2d) SedimentsMixtureQuasi3d (class in slim4.particles3d) SedimentsQuasi3d (class in slim4.particles3d) select_gpu() (in module slim4.slim) set() (slim4.slim.DataStatic method) (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method) set_atmospheric_pressure() (slim4.slim2d.ShallowWater method) (slim4.slim3d.Problem method) set_attr() (slim4.particles2d.ParticleArrays2d method) set_bbox() (slim4.post.Rasterizer method) set_boundary() (slim4.particles2d.Particle2dRT method) (slim4.particles2d.Plastic method) (slim4.particles2d.Sediments2d method) (slim4.particles2d.Tracker2d method) (slim4.particles3d.Particle3dCorals method) (slim4.particles3d.Particle3dSeagrass method) (slim4.particles3d.Particle3dSediments method) (slim4.particles3d.SedimentsMixtureQuasi3d method) (slim4.particles3d.SedimentsQuasi3d method) (slim4.particles3d.Tracker3d method) set_boundary_closed() (slim4.swan.Swan method) set_boundary_parameters() (slim4.swan.Swan method) set_boundary_spectra() (slim4.swan.Swan method) set_c() (slim4.slim2d.ShallowWater method) (slim4.slim3d.Tracer method) (slim4.slim3d.UV method) set_clipping_velocity() (slim4.slim3d.Problem method) set_coriolis() (slim4.slim2d.ShallowWater method) (slim4.slim3d.UV method) set_currents() (slim4.swan.Swan method) set_diffusion() (slim4.slim2d.Tracer method) set_dissipation() (slim4.slim2d.ShallowWater method) (slim4.slim3d.Problem method) (slim4.slim3d.UV method) set_f3d() (slim4.slim2d.ShallowWater method) set_from_device() (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method) set_from_host() (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method) set_horizontal_diffusivity() (slim4.slim3d.Tracer method) set_horizontal_viscosity() (slim4.slim3d.UV method) set_layer() (slim4.slim3d.DataExtractLayer method) set_name() (slim4.slim.Data method) (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method) set_nudging() (slim4.slim2d.ShallowWater method) (slim4.slim3d.Tracer method) (slim4.slim3d.UV method) set_open_boundary() (slim4.slim2d.ShallowWater method) (slim4.slim2d.Tracer method) (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method) (slim4.slim3d.Tracer method) (slim4.slim3d.UV method) set_option() (slim4.swan.Swan method) set_penetrating_flux() (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method) set_physical_attributes() (slim4.particles3d.Particle3dSeagrass method) set_points() (slim4.tpxo.GridTPXO method) set_ramp() (slim4.slim.Data method) set_reinterp_coordinates() (slim4.pre.Struct method) set_roughness_length() (slim4.swan.Swan method) set_source() (slim4.slim2d.Tracer method) set_state_equation_jackett() (slim4.slim3d.Problem method) (slim4.slim3d.UV method) set_state_equation_linear() (slim4.slim3d.Problem method) (slim4.slim3d.UV method) set_state_equation_teos10() (slim4.slim3d.Problem method) (slim4.slim3d.UV method) set_surface_flux() (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method) (slim4.slim3d.Tracer method) set_surface_stress() (slim4.slim2d.ShallowWater method) (slim4.slim3d.Problem method) (slim4.slim3d.UV method) set_surface_tracer_nudging() (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method) (slim4.slim3d.Tracer method) set_surface_water() (slim4.slim2d.ShallowWater method) (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method) (slim4.slim3d.Tracer method) (slim4.slim3d.UV method)

set_surface_water_tracer() (slim4.slim3d.Tracer method) set_time() (slim4.slim3d.DataLinear method) (slim4.swan.StationarySwan method) set_velocity_nudging() (slim4.slim3d.Problem method) set_vertical_diffusivity() (slim4.slim3d.Tracer method) set_vertical_transect() (slim4.post.Rasterizer method) set_vertical_viscosity() (slim4.slim3d.UV method) set_viscosity() (slim4.slim2d.ShallowWater method) set_wall_boundary() (slim4.slim2d.ShallowWater method) (slim4.slim2d.Tracer method) (slim4.slim3d.OfflineProblem method) (slim4.slim3d.Problem method) (slim4.slim3d.Tracer method) (slim4.slim3d.UV method) set_wall_decay_time() (slim4.slim3d.UV method) set_water_level() (slim4.swan.Swan method) set_wind_speed() (slim4.swan.Swan method) settle_particles() (slim4.particles3d.Particle3dCorals method) settle_particles_discrete() (slim4.particles3d.Particle3dCorals method) settle_particles_discrete2() (slim4.particles3d.Particle3dCorals method) settle_sediments() (slim4.particles3d.Particle3dSediments method) ShallowWater (class in slim4.slim2d) si_format() (in module slim4.slim) slim4.abin module slim4.interpolator module slim4.netcdf_to_abin module slim4.particles module slim4.particles2d module slim4.particles3d module slim4.post module slim4.pre module slim4.pre3d module slim4.rbf module slim4.slim module slim4.slim2d module slim4.slim3d module slim4.swan module slim4.tools module slim4.tpxo module slim_dg_from_swanoutput() (slim4.swan.Swan method) smooth_bath() (slim4.slim2d.Mesh method) smooth_bath_haney() (slim4.slim2d.Mesh method) sname (slim4.swan.SpectraAtPoints attribute) solve() (slim4.slim.LinearSolver method) (slim4.slim.LinearSolverPETSc method) (slim4.slim3d.Tracer method) solve_fv() (slim4.slim3d.Turbulence method) solve_horizontal() (slim4.slim3d.UV method) solve_hpg() (slim4.slim3d.UV method) solve_vertical() (slim4.slim3d.UV method) solve_w() (slim4.slim3d.UV method) solve_w_tilde() (slim4.slim3d.UV method) sort() (slim4.particles2d.ParticleArrays2d method) (slim4.particles3d.ParticleArrays3d method) spectra (slim4.swan.Swan attribute) spectra_at_points (slim4.swan.Swan attribute) SpectraAtPoints (class in slim4.swan) split_segments() (in module slim4.slim) StationarySwan (class in slim4.swan) Struct (class in slim4.pre) sum_idx() (slim4.slim.MPI method) sum_scalar() (slim4.slim.MPI method) SURFACE (slim4.interpolator.Zlevel attribute) Swan (class in slim4.post) (class in slim4.swan) swan_boundary_from_file() (in module slim4.swan) swan_bpnt_list() (in module slim4.swan) swan_variables (slim4.swan.Swan attribute) SwanBoundaryData (class in slim4.swan) SwanOptions (class in slim4.swan) synchronize() (in module slim4.slim)

T

tbegspc (slim4.swan.SpectraAtPoints attribute) TemporalIterator (class in slim4.slim3d) time (slim4.swan.StationarySwan attribute) time() (slim4.pre.Struct method) TimeSeries2D (class in slim4.interpolator) TimeSeries3D (class in slim4.interpolator) TmpVar (class in slim4.slim3d) to_neighbours_cg_nodes() (slim4.slim2d.Mesh method) TPXO (class in slim4.tpxo) tpxo2abin() (in module slim4.netcdf_to_abin)

Tracer (class in slim4.slim2d) (class in slim4.slim3d) Tracker2d (class in slim4.particles2d) Tracker3d (class in slim4.particles3d) transpose() (slim4.slim.IdxArrayDevice method) (slim4.slim.ScalarArrayDevice method) triads (slim4.swan.SwanOptions attribute) triads_alpha (slim4.swan.SwanOptions attribute) Turbulence (class in slim4.slim3d) TurbulenceModelType (class in slim4.slim3d) TurbulenceStabilityType (class in slim4.slim3d)

U

under_relaxation_coeff (slim4.swan.SwanOptions attribute) update() (slim4.particles2d.ResidenceTimeArray method) (slim4.particles3d.ConnectivityArray method) (slim4.particles3d.SeagrassFateArray method) (slim4.tools.PreproReaderFunction1d method) (slim4.tools.PreproReaderTimeseries1d method) update_biological_state() (slim4.particles3d.Particle3dCorals method) update_biological_state_discrete() (slim4.particles3d.Particle3dCorals method) update_biological_state_discrete2() (slim4.particles3d.Particle3dCorals method) update_clock() (slim4.particles2d.Particle2dRT method) update_density() (slim4.slim3d.UV method) update_deposition_clock() (slim4.particles3d.Particle3dSeagrass method)

update_depth_position() (slim4.particles3d.SedimentsMixtureQuasi3d method) (slim4.particles3d.SedimentsQuasi3d method) update_exposition_time() (slim4.particles2d.Particle2dRT method) update_fate_arrays() (slim4.particles3d.Particle3dSeagrass method) update_mass() (slim4.particles2d.Plastic method) update_physical_state() (slim4.particles3d.Particle3dCorals method) update_physical_state_discrete() (slim4.particles3d.Particle3dCorals method) update_physical_state_discrete2() (slim4.particles3d.Particle3dCorals method) update_physical_state_discrete2_NT() (slim4.particles3d.Particle3dCorals method) update_state_and_residence_time() (slim4.particles2d.Particle2dRT method) use_mean_wave_parameter() (slim4.swan.Swan method) UV (class in slim4.slim3d)

V

VectorRotation (class in slim4.tools) vertical_sum() (slim4.slim3d.Mesh method) ViscosityFormula (class in slim4.slim2d) visualize_prepro_data() (in module slim4.tools) visualize_prepro_data3d() (in module slim4.tools) VMap (class in slim4.pre3d)

VMapExponential (class in slim4.pre3d) VMapHybrid (class in slim4.pre3d) VMapProportional (class in slim4.pre3d) VMapSiddornFurner (class in slim4.pre3d) VMapSongHaidvogel (class in slim4.pre3d) VMapZ (class in slim4.pre3d) vorticity() (slim4.slim3d.Mesh method)

W

wbreak (slim4.swan.SwanOptions attribute) wcap (slim4.swan.SwanOptions attribute) weights (slim4.rbf.Csr attribute) (slim4.rbf.RbfInfo attribute) weights_3d() (in module slim4.interpolator) white_capping_model (slim4.swan.SwanOptions attribute) write() (slim4.slim.DataFile static method) write_array() (in module slim4.abin)

write_fort14() (slim4.swan.Swan method) write_fort18() (slim4.swan.Swan method) write_node_global_ids() (slim4.post.Swan method) write_script() (slim4.swan.Swan method) write_script_boundary() (slim4.swan.NonStationarySwan method) (slim4.swan.StationarySwan method) (slim4.swan.Swan method) write_spectra() (slim4.swan.Swan method)

X

xdmf_abin_shrink() (in module slim4.tools)

Z

Zlevel (class in slim4.interpolator)